Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs73312482 chr5:169008532 A/G 1.62E-8 506 22.57 23.25 6.83 KM Plot
LGG rs73312488 chr5:169009968 A/G 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs73312490 chr5:169010168 G/T 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs73312497 chr5:169011069 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73312501 chr5:169011223 T/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314505 chr5:169011357 T/A 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314508 chr5:169012323 A/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314512 chr5:169012540 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314514 chr5:169012583 G/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314520 chr5:169012937 T/C 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314525 chr5:169016236 G/A 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314541 chr5:169022471 A/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs73314574 chr5:169036571 G/A 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs73355274 chr10:107906803 A/G 8.68E-5 501 21.6 28.68 13 KM Plot
LGG rs73357016 chr10:107925479 C/G 5.88E-5 500 21.6 29.53 13 KM Plot